PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G375000.2.p
Common NamePRUPE_ppa005486mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 459aa    MW: 49933.4 Da    PI: 7.0264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G375000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.6e-053453831255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Prupe.1G375000.2.p 345 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 383
                         7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.547333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-5343387No hitNo description
SuperFamilySSF474591.03E-10343395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-9347390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MESANLHHQH HQLQENLVGS SSLAATPSCY AVGTKHAWTP SATLSSSGNS SNSGLDPLNS  60
SMVPDLGFHW LTNITSEHQS PHDLAKIKEE LTSSSSSDHH HHHHNSFPKL TEMLTSAAAS  120
TSIDHDQYYQ FMKNEEKNQL IMNDLSEKLL LKTLSSGCQI NSIINPHHHQ ISSAGEFYSN  180
DDHHHLLHNS NLIGGVPPGM PSRSGGHFSQ IYPSINVSNL NRSLSSSSIS NSSLDMNLQA  240
MDLLGASARF STGTSSSFST QPNSHDTLGL YKETHDSFAT LQQMHQSTDP HRLSCGNNNK  300
ISSFDNEITE VKRPGSSIEP KVTQATAPKK SRLESRTACP PFKVRKEKLG DRIAALQQLV  360
APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNK SSKTMQGGVT EINENDETKR  420
DLRSRGLCLV PLSCMSYVTS DIGEGGSIWP APNFGGGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223238.10.0hypothetical protein PRUPE_ppa005486mg
TrEMBLM5XEA10.0M5XEA1_PRUPE; Uncharacterized protein
STRINGVIT_18s0001g12970.t011e-143(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-56bHLH family protein